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Scientists Say the “Lizard Brain” Is a Myth, But the Truth About How Our Brains Evolved May Be Even Stranger

One of the most popular explanations of human behavior has been that somewhere beneath our rational mind lurks an ancient “lizard brain”—a primitive evolutionary holdover responsible for instinct, emotion, fear, and aggression.

There is just one problem. Neuroscientists have long known that the lizard brain story is wrong. Humans did not evolve a sophisticated new brain by simply stacking it on top of an older reptilian one.

But a new study suggests the enduring lizard brain myth may have inadvertently pointed to something more interesting. Mammalian brains do appear to be organized around two broad computational systems—but not an ancient reptilian brain located beneath a newer, more sophisticated one. Instead, the divide appears to reflect two fundamentally different ways of organizing and processing information.

Published in Science Advances, the research combines anatomical measurements from 182 mammalian species with experiments using artificial neural networks. The researchers found a striking evolutionary trade-off between the neocortex and a collection of structures associated with smell, memory, and the limbic system.

Instead of representing “new” and “old” brains, the researchers say these regions may have evolved different wiring styles optimized for solving different kinds of computational problems.

“Rather than an ‘old’ brain and a ‘new’ brain, our results suggest two systems wired for different kinds of computation,” lead author Dr. Nabil Imam, a researcher at the Georgia Institute of Technology, told The Debrief. “The neocortex is wired to preserve spatial relationships—for example, neighboring points in the visual world are analyzed by neighboring parts of the cortex. The limbic system is more diffusely connected and supports holistic associations across different pieces of information.”

“So, the division between the neocortex and limbic system is about how the two systems are wired,” Dr. Imam added.

This distinction offers a very different picture from the famous lizard brain story.

The lizard brain concept grew from the so-called triune brain theory, which portrays the human brain as having evolved in distinct layers. A primitive “lizard brain” handling basic instincts, a mammalian limbic system producing emotion, and, finally, a newer neocortex responsible for higher thought.

The problem is that neuroscience has long since overturned that evolutionary story. Vertebrate brains did not evolve by progressively stacking newer brain regions on top of older, more primitive ones. Instead, vertebrates share essentially the same broad organizational plan, with existing regions changing in size, connectivity, and function over evolutionary time.

The new study suggests, however, that the mammalian brain may be divided very differently—not by evolutionary age, but by how different neural systems are wired to process information.

Across 182 species from 10 taxonomic groups, animals with an unusually large olfactory system tended to have a smaller-than-expected neocortex. Animals with an expanded neocortex tended to show the opposite pattern.

The nine-banded armadillo provides a particularly dramatic example. Armadillos are largely nocturnal and depend heavily on smell while foraging. As researchers note, the armadillo’s olfactory system was approximately 1.5 times larger than expected for its overall brain size. Its hippocampus—a region central to memory and spatial processing—was about twice its expected size.

Its neocortex, meanwhile, was reduced by a factor of 2.8. Primates such as squirrel monkeys sit closer to the other end of the spectrum. They rely heavily on vision and devote a large portion of their expanded neocortex to processing visual information.

At first glance, that could look like evolution trading smell for sight. But the researchers noticed something more intriguing. The hippocampus grew and shrank alongside the olfactory system, even though memory is obviously not another form of smell. Other structures traditionally grouped into the limbic system, including the amygdala and septum, also tended to change together.

That suggested the important difference might not be what these regions process, but how they are wired to process it.

Two Very Different Ways to Build a Brain

Vision offers a relatively straightforward example. Neighboring points in the visual world are generally processed through neighboring areas of the visual system. Touch operates similarly. Locations beside one another on your body retain spatial relationships as the nervous system processes them. Hearing also uses orderly mappings, including those based on sound frequency.

The result is what neuroscientists call “spatiotopic” organization. In simple terms, the brain preserves relationships between incoming information by arranging it into orderly maps.

However, smell works differently. Odors are represented through combinations of activity distributed across networks rather than being laid out in the same neat spatial fashion.

The researchers suspected that this difference might help explain the anatomical trade-off they had identified across mammals. To test the idea, they turned to artificial neural networks trained to handle vision, touch, hearing, and smell.

They then mapped the networks’ internal models onto artificial two-dimensional surfaces resembling sheets of cortex.

Results showed that networks optimized for vision, touch, and hearing produced smooth, highly ordered maps. On a scale in which 1 represented strong spatial order, the visual network scored 0.90, touch scored 0.86, and hearing scored 0.89.

Yet, the smell network scored just 0.11. Rather than producing a smooth map, information was scattered across a fractured, distributed representation. The researchers even found that imposing localized connectivity on the olfactory model harmed its ability to perform its task.

Researchers then examined memory. Using an artificial network designed to reproduce some relational computations associated with the hippocampus and entorhinal cortex, researchers again saw a fractured, distributed representation resembling the olfactory system rather than vision, hearing or touch.

For Dr. Imam, one of the most surprising results was that artificial networks arrived at an organization resembling real brains despite learning in profoundly different ways.

“Artificial networks are trained by an algorithm that propagates errors through the network, whereas brains are shaped by evolution and through localized changes in synapses,” Imam explained. “The fact that both nevertheless arrive at similar organization suggests that the structure of the information itself—whether visual, auditory, tactile, or olfactory—determines what kind of wiring works best.”

No “Lizard Brain,” But Evolution May Be Trading One Kind of Brainpower for Another

Researchers next wanted to know whether competition between these two wiring styles could reproduce the anatomical patterns seen across real mammals.

They created an evolutionary simulation containing five artificial networks. Vision, hearing, and touch occupied one computational domain based on localized, spatial organization. Smell and hippocampal memory occupied another based on distributed connectivity.

Then an evolutionary algorithm redistributed computational resources between them.

When selection favored vision, resources moved toward the spatially organized networks. When selection favored smell, the distributed networks expanded.

But something interesting occurred to the simulated hippocampal network. Even though researchers weren’t directly selecting for memory, the hippocampal network grew along with the olfactory network because both shared the same broad computational architecture. As resources shifted toward the other system, both contracted.

That closely resembled the pattern found across real mammalian brains.

“It suggests that evolution may not be selecting individual brain regions one at a time, but rather the functions produced by whole patterns of wiring,” Dr. Imam explained. “Because regions that share similar wiring tend to grow or shrink together, selection for one kind of function comes at the expense of another, given that the system must operate with limited energy and space.”

That does not mean an animal with a larger neocortex is simply more intelligent than one with a larger limbic system. Nor does the distributed system represent a primitive emotional brain fighting against a rational one.

Instead, the two architectures appear suited to different computational problems. Evolution may have repeatedly adjusted how much neural real estate mammals devote to each.

Nevertheless, researchers caution that their models are intentionally simplified. Anatomical measurements came from several datasets; some taxonomic groups are better represented than others, and artificial neural networks are not replicas of biological brains.

The evolutionary model is intended to demonstrate that a relatively simple developmental mechanism could produce the observed trade-off, not to reconstruct exactly how mammalian brains evolved.

Still, the research raises another interesting possibility extending beyond the demise of the “lizard brain.” Our brains may arrive in the world with considerably more computational structure already built in than the familiar idea of a blank slate implies.

“The brain may be much less of a blank slate than we often imagine,” Dr. Imam told The Debrief. “Evolution and development build useful assumptions into its wiring before experience-driven learning.”

It is also another example of something scientists are increasingly encountering across very different areas of biology: evolution can produce remarkably sophisticated structures and systems that human engineers are just starting to understand, much less reproduce.

In a recent study covered by The Debrief, researchers discovered that cable bacteria construct microscopic electrical pathways from nickel-rich nanoribbons arranged remarkably like braided electrical wires. The naturally grown structures may achieve extraordinary conductivity while remaining flexible, properties that researchers are now interested in replicating for bio-based electronics.

The mammalian brain represents an enormously more complicated example, but the underlying lesson may be similar. Evolution does not begin with a blank slate each generation. It can build useful solutions into biological architecture itself, leaving subsequent learning along with adaptation to operate within structures refined over immense spans of evolutionary time.

That could also help explain one of the most striking differences between biological intelligence and today’s artificial intelligence. Modern AI systems can require enormous datasets to acquire abilities that biological brains learn from comparatively limited experience.

“That built-in structure may explain why brains can learn efficiently from relatively little experience, whereas most artificial networks require enormous datasets to learn useful functions,” Imam said. “The idea has deep roots in philosophy of mind, but only recently have neuroscience and computer science begun to provide concrete demonstrations of how such built-in structure can aid function.”

The recent study, “Dual computational systems in the development and evolution of mammalian brains,” appeared in Science Advances.

Tim McMillan is a retired law enforcement executive, investigative reporter and co-founder of The Debrief. His writing typically focuses on defense, national security, the Intelligence Community and topics related to psychology. You can follow Tim on Twitter: @LtTimMcMillan.  Tim can be reached by email: tim@thedebrief.org or through encrypted email: LtTimMcMillan@protonmail.com 

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A look at spatial intelligence and world models

It’s been several years since generative AI and large language models (LLMs) took the world by storm. LLMs surpassed earlier natural-language systems at generating text, while diffusion models enabled generating images, music, and videos.

These generative AI models work well in the digital world, but on their own, they have limited capabilities to comprehend the three-dimensional physical world and other spaces. This includes the objects occupying an area, how they relate to each other, tracking movement, and answering complex questions requiring an understanding of dimensions, distances, motion, and collisions.

Spatial intelligence is an AI capability that allows models to reason about three-dimensional space. These models can generate 3D scenes of the world and other spaces. This content can then be displayed through traditional renderers, game engines, or AR/VR systems that use spatial computing techniques. But it’s the spatial intelligence model’s ability to connect natural language with 3D models that has the most applications in robotics, manufacturing, construction, and other physical environments.   

Dr. Fei-Fei Li, often called the godmother of AI, published a manifesto on how spatial intelligence is AI’s next frontier, contrasting it with LLMs. “While current state-of-the-art AI can excel at reading, writing, research, and pattern recognition in data, these same models bear fundamental limitations when representing or interacting with the physical world,” wrote Dr. Li. “Our view of the world is holistic—not just what we’re looking at, but how everything relates spatially, what it means, and why it matters. Understanding this through imagination, reasoning, creation, and interaction—not just descriptions—is the power of spatial intelligence.”

The concept of spatial intelligence isn’t new and was described in Howard Gardner’s book, Frames of Mind, in 1983. Recent breakthroughs, including the launch of World Labs’ Marble and its $1 billion funding round, and competing approaches from Google’s Genie 3 and Nvidia Cosmos, should put spatial intelligence and world models on more R&D road maps.

What are spatial intelligence models?

It’s important to develop AI literacy and understand the terminology and concepts related to the physical world and 3D AI technologies: 

  • Spatial intelligence encompasses specialized approaches such as geospatial models for mapping the physical world and building information modeling (BIM) for modeling physical structures. It also extends to generative 3D, robotics, and physical reasoning applications.
  • World models are a class of neural network architectures and are currently a prominent approach to building spatial intelligence.
  • Digital twins are live, virtual replicas of physical assets that combine 3D models with real-time sensor data. Spatial intelligence, an emerging capability of digital twins, adds natural-language prompting, generative scenario exploration, and physics-aware reasoning.
  • Spatial computing refers to digital content anchored in and interacting with physical space, sensed and rendered in three dimensions and delivered through AR/VR and mixed-reality systems.

“Spatial intelligence models go beyond pixels to understand the 3D structure of the world—how objects are positioned, how they move, and how they interact,” says David Fattal, founder and CTO at Leia. “This enables applications like more realistic video generation, spatial computing interfaces, and AI systems that can reason about physical environments. As real-world 3D data becomes more available, these models will become foundational to the next generation of visual AI.”

Monitoring the built environment

To better understand spatial intelligence, let’s consider physical infrastructure such as bridges and buildings. The American Society of Civil Engineers estimates a $9.1 trillion investment is needed from 2024 through 2033 to achieve a state of good repair. When maintenance and monitoring lag, it can lead to major failures such as the 2022 collapse of the Fern Hollow Bridge in Pittsburgh.

Spatial intelligence and the development of digital twins may help identify issues earlier and prioritize where investments are needed. “Spatial intelligence models serve as the 4D digital blueprints for our built environment, allowing us to visualize and predict the complex interactions between aging assets and the shifting ground beneath them,” says Patrick Cozzi, chief platform officer at Bentley Systems. “By synthesizing disparate geospatial data into a living digital twin, these models provide the foresight necessary to mitigate the hidden risks of structural fatigue and subsurface instability.”

There’s a significant challenge in bridge health monitoring and transitioning from manual, infrequent structural inspections to leveraging sensors, digital twins, and spatial intelligence. Cozzi adds, “This integration of continuous field data moves beyond static documentation, empowering agencies to evolve from reactive repairs to proactive, resilient asset management that safeguards the long-term integrity of our most critical public systems.”

Avoiding collisions

Bridges are largely static, but the real world is increasingly being occupied by autonomous systems such as self-driving cars, robots, and drones. And where there are moving systems, there is a risk of collisions.

“Spatial intelligence models are AI systems that reason about the physical world by combining vision, sensor data, and contextual cues to understand space, motion, and object relationships,” says Sudeep George, CTO at iMerit. “The value of spatial intelligence models lies not just in perceiving an environment, but in enabling machines to act within it safely and in real time. That is especially important in robotics and autonomous systems, where decisions must be made in complex, multimodal, fast-changing settings.”

To see one example, this tutorial for simulating robotic environments combines Nvidia Isaac Sim, an open source robotics reference framework, with spatial intelligence in Marble from World Labs. 

Today’s collision detection systems, such as those used in autonomous vehicles, typically rely on modules for sensing, perception, planning, and control. Spatial intelligence models may offer improvements by assessing the collision risks of unidentified objects or by tracking objects that move out of sensor view. For example, Waymo’s World Model, built on Genie 3, is a simulator that generates complex weather conditions and other critical safety events.

For an out-of-this-world example, James Urquhart, field CTO and technology evangelist at Kamiwaza, has delivered several examples of spatial intelligence applications, including one for satellite collision detection and conflict analysis. Urquhart says, “Models that specialize in these types of data sets, as well as the physics and geography of the real world, enable faster and more accurate decision-making for tasks that depend on them.”

Applying spatial intelligence

Recent spatial intelligence announcements include creating 3D worlds from image or text prompts with Marble and simulating water physics, lighting, weather, and animal behavior with Genie 3. But difficulties remain in bringing spatial intelligence to physical-world use cases.

“Spatial intelligence and world models are laying the groundwork for future AI agents that will be able to interact in and with our physical world,” says Jason Corso, cofounder and chief scientist at Voxel51. “These models are significantly more challenging to develop and test, largely because the data underlying their development is complex, and it’s hard to handle all of the combinatorics involved in the physical world.”

In addition to learning the models and prototyping with them, development and data leaders need to review the data assets that will feed spatial intelligence models. “Spatial intelligence models translate location signals into a structured understanding of the real world, but they’re only as reliable as the data beneath them,” says Dan Adams, executive vice president and general manager of Enrich at Precisely. “The real unlock isn’t the model—it’s the reference layer with persistent identifiers, confidence metadata, and source lineage that lets AI reason about places, not just match strings.”

Even once applications are developed, there will be infrastructure challenges in deploying them at the edge. Ali Kayyam, principal research scientist at BrainChip, says, “The key to unlocking spatial intelligence at scale is having the low-power, event-driven hardware that can run it at the sensor in real time where it matters most.”

Where to get started

My suggestions for developers looking to get hands-on with spatial intelligence and world models:

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